First of all we add the EPEL and ELGIS (Enterprise Linux GIS) repository to our repostory list.
rpm -Uvh http://dl.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-8.noarch.rpm
rpm -Uvh http://elgis.argeo.org/repos/6/elgis-release-6-6_0.noarch.rpm
It seems that EPEL broke the compatibility with GDAL.
Take a look at http://www.postgresql.org/message-id/1407521448.20899.9.camel@asus-laptop-03.gunduz.org.
Error: Package: gdal-1.9.2-4.el6.x86_64 (elgis)
Requires: libarmadillo.so.3()(64bit)
Error: Package: gdal-libs-1.9.2-4.el6.x86_64 (elgis)
Requires: libarmadillo.so.3()(64bit)
We need to exclude the armadillo package from the EPEL repository.
vi /etc/yum.repos.d/epel.repo
[epel] name=Extra Packages for Enterprise Linux 6 - $basearch #baseurl=http://download.fedoraproject.org/pub/epel/6/$basearch mirrorlist=https://mirrors.fedoraproject.org/metalink?repo=epel-6&arch=$basearch failovermethod=priority enabled=1 gpgcheck=1 gpgkey=file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-6 exclude=armadillo*
Let us just try to get the corret rpm package using this link http://proj.badc.rl.ac.uk/cedaservices/ticket/670 provided by the JASMIN analysis platform.
wget http://proj.badc.rl.ac.uk/cedaservices/raw-attachment/ticket/670/armadillo-3.800.2-1.el6.x86_64.rpm
yum install armadillo-3.800.2-1.el6.x86_64.rpm
It should recognize the blas dependency.
Installing: armadillo x86_64 3.800.2-1.el6 /armadillo-3.800.2-1.el6.x86_64 40 k Installing for dependencies: blas x86_64 3.2.1-4.el6 base 321 k
After that yum install gdal should work like a charme.
We also need hdf5 package so we need to install it, too.
yum install hdf5.so.6
Installing: hdf5-openmpi i686 1.8.5.patch1-9.el6 epel 1.2 M Installing for dependencies: glibc i686 2.12-1.149.el6_6.7 updates 4.3 M libgcc i686 4.4.7-11.el6 base 113 k libgfortran i686 4.4.7-11.el6 base 245 k libibumad i686 1.3.9-1.el6 base 57 k libibverbs i686 1.1.8-3.el6 base 53 k libnl i686 1.1.4-2.el6 base 124 k librdmacm i686 1.0.18.1-1.el6 base 58 k libstdc++ i686 4.4.7-11.el6 base 301 k libtool-ltdl i686 2.2.6-15.5.el6 base 45 k lm_sensors-libs i686 3.1.1-17.el6 base 37 k nss-softokn-freebl i686 3.14.3-22.el6_6 updates 157 k openmpi i686 1.8.1-1.el6 base 2.9 M opensm-libs i686 3.3.17-1.el6 base 60 k papi i686 5.1.1-5.el6 base 485 k zlib i686 1.2.3-29.el6 base 73 k Updating for dependencies: cpp x86_64 4.4.7-11.el6 base 3.7 M gcc x86_64 4.4.7-11.el6 base 10 M gcc-c++ x86_64 4.4.7-11.el6 base 4.7 M gcc-gfortran x86_64 4.4.7-11.el6 base 4.7 M glibc x86_64 2.12-1.149.el6_6.7 updates 3.8 M glibc-common x86_64 2.12-1.149.el6_6.7 updates 14 M glibc-devel x86_64 2.12-1.149.el6_6.7 updates 983 k glibc-headers x86_64 2.12-1.149.el6_6.7 updates 612 k libgcc x86_64 4.4.7-11.el6 base 102 k libgfortran x86_64 4.4.7-11.el6 base 267 k libgomp x86_64 4.4.7-11.el6 base 133 k libstdc++ x86_64 4.4.7-11.el6 base 294 k libstdc++-devel x86_64 4.4.7-11.el6 base 1.6 M nspr x86_64 4.10.6-1.el6_5 base 113 k nspr-devel x86_64 4.10.6-1.el6_5 base 111 k nss-softokn x86_64 3.14.3-22.el6_6 updates 262 k nss-softokn-devel x86_64 3.14.3-22.el6_6 updates 14 k nss-softokn-freebl x86_64 3.14.3-22.el6_6 updates 167 k nss-softokn-freebl-devel x86_64 3.14.3-22.el6_6 updates 139 k nss-util x86_64 3.16.2.3-2.el6_6 updates 66 k nss-util-devel x86_64 3.16.2.3-2.el6_6 updates 68 k
The libhdf5.so.6 should be located at /usr/lib64/openmpi/lib/libhdf5.so.6.
Ensure which libraries are missing by using which ogrinfo
/usr/bin/ogrinfo
and ldd /usr/bin/ogrinfo
linux-vdso.so.1 => (0x00007fff2a525000) libgdal.so.1 => /usr/lib64/libgdal.so.1 (0x00007f3bdbe16000) libarmadillo.so.3 => /usr/lib64/libarmadillo.so.3 (0x00007f3bdbc10000) libpoppler.so.5 => /usr/lib64/libpoppler.so.5 (0x0000003950e00000) libfreexl.so.1 => /usr/lib64/libfreexl.so.1 (0x00007f3bdba06000) libgeos_c.so.1 => /usr/lib64/libgeos_c.so.1 (0x00007f3bdb7e2000) libodbc.so.2 => /usr/lib64/libodbc.so.2 (0x00007f3bdb57a000) libodbcinst.so.2 => /usr/lib64/libodbcinst.so.2 (0x00007f3bdb369000) libexpat.so.1 => /lib64/libexpat.so.1 (0x0000003947200000) libxerces-c-3.0.so => /usr/lib64/libxerces-c-3.0.so (0x00007f3bdadc7000) libjasper.so.1 => /usr/lib64/libjasper.so.1 (0x0000003945200000) libnetcdf.so.6 => /usr/lib64/libnetcdf.so.6 (0x00007f3bdaa82000) libhdf5.so.6 => not found libgif.so.4 => /usr/lib64/libgif.so.4 (0x000000394ee00000) libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x0000003953e00000) libgeotiff.so.2 => /usr/lib64/libgeotiff.so.2 (0x00007f3bda84e000) libtiff.so.3 => /usr/lib64/libtiff.so.3 (0x0000003951a00000) libgta.so.0 => /usr/lib64/libgta.so.0 (0x00007f3bda644000) libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x0000003947e00000) libcfitsio.so.0 => /usr/lib64/libcfitsio.so.0 (0x00007f3bda28f000) libpq.so.5 => /usr/lib64/libpq.so.5 (0x00007f3bda067000) liblzma.so.0 => /usr/lib64/liblzma.so.0 (0x000000394de00000) libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003943a00000) librt.so.1 => /lib64/librt.so.1 (0x0000003944600000) libdl.so.2 => /lib64/libdl.so.2 (0x0000003943e00000) libdapclient.so.3 => /usr/lib64/libdapclient.so.3 (0x00007f3bd9e37000) libdapserver.so.7 => /usr/lib64/libdapserver.so.7 (0x00007f3bd9c2c000) libdap.so.11 => /usr/lib64/libdap.so.11 (0x00007f3bd993b000) libspatialite.so.2 => /usr/lib64/libspatialite.so.2 (0x00007f3bd945d000) libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x0000003958e00000) libCharLS.so.1 => /usr/lib64/libCharLS.so.1 (0x00007f3bd9208000) libmysqlclient.so.16 => /usr/lib64/mysql/libmysqlclient.so.16 (0x00007f3bd8e84000) libz.so.1 => /lib64/libz.so.1 (0x0000003944200000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f3bd8c4c000) libnsl.so.1 => /lib64/libnsl.so.1 (0x0000003954200000) libssl.so.10 => /usr/lib64/libssl.so.10 (0x0000003952a00000) libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x0000003950a00000) libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x000000394fe00000) libm.so.6 => /lib64/libm.so.6 (0x0000003943600000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f3bd8a34000) libc.so.6 => /lib64/libc.so.6 (0x0000003943200000) libhdf5.so.6 => not found liblapack.so.3 => /usr/lib64/atlas/liblapack.so.3 (0x00007f3bd8212000) libblas.so.3 => /usr/lib64/libblas.so.3 (0x00007f3bd7fbb000) libcblas.so.3 => /usr/lib64/atlas/libcblas.so.3 (0x00007f3bd7d9a000) libclapack.so.3 => /usr/lib64/atlas/libclapack.so.3 (0x00007f3bd7b82000) liblcms.so.1 => /usr/lib64/liblcms.so.1 (0x0000003950600000) libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x0000003947600000) libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x0000003948a00000) libopenjpeg.so.2 => /usr/lib64/libopenjpeg.so.2 (0x00007f3bd7963000) libgeos-3.3.8.so => /usr/lib64/libgeos-3.3.8.so (0x00007f3bd75cf000) libltdl.so.7 => /usr/lib64/libltdl.so.7 (0x0000003951e00000) libhdf5_hl.so.6 => not found libhdf5.so.6 => not found libSM.so.6 => /usr/lib64/libSM.so.6 (0x0000003951600000) libICE.so.6 => /usr/lib64/libICE.so.6 (0x0000003951200000) libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003946600000) libproj.so.0 => /usr/lib64/libproj.so.0 (0x00007f3bd7380000) libbz2.so.1 => /lib64/libbz2.so.1 (0x0000003957200000) libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007f3bd713b000) libldap_r-2.4.so.2 => /lib64/libldap_r-2.4.so.2 (0x00007f3bd6ee7000) /lib64/ld-linux-x86-64.so.2 (0x0000003942e00000) libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x000000394e200000) libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f3bd6ce2000) libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x0000003957a00000) libidn.so.11 => /lib64/libidn.so.11 (0x0000003958a00000) libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007f3bd6a94000) libkrb5.so.3 => /lib64/libkrb5.so.3 (0x000000394f600000) libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x0000003950200000) libcom_err.so.2 => /lib64/libcom_err.so.2 (0x000000394f200000) libssl3.so => /usr/lib64/libssl3.so (0x0000003953600000) libsmime3.so => /usr/lib64/libsmime3.so (0x0000003953200000) libnss3.so => /usr/lib64/libnss3.so (0x0000003952e00000) libnssutil3.so => /usr/lib64/libnssutil3.so (0x00007f3bd6865000) libplds4.so => /lib64/libplds4.so (0x00007f3bd6661000) libplc4.so => /lib64/libplc4.so (0x0000003952200000) libnspr4.so => /lib64/libnspr4.so (0x0000003952600000) libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x0000003959200000) libfreebl3.so => /lib64/libfreebl3.so (0x00007f3bd645c000) libgfortran.so.3 => /usr/lib64/libgfortran.so.3 (0x00007f3bd616a000) libf77blas.so.3 => /usr/lib64/atlas/libf77blas.so.3 (0x00007f3bd5f4a000) libatlas.so.3 => /usr/lib64/atlas/libatlas.so.3 (0x00007f3bd58ee000) libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x0000003946200000) libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x000000394fa00000) libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007f3bd56ea000) libresolv.so.2 => /lib64/libresolv.so.2 (0x0000003945600000) liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x0000003956e00000) libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x0000003955600000) libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003946a00000) libselinux.so.1 => /lib64/libselinux.so.1 (0x0000003944e00000)
Copy the missing libraries to the lib64 folder.
cp /usr/lib64/openmpi/lib/libhdf5.so.6 /usr/lib64
cp /usr/lib64/openmpi/lib/libhdf5_hl.so.6 /usr/lib64
Refresh the library cache by using ldconfig.
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Worked like a charm the first time. Thanks for this note.
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